Transcript: GPRC5D-AS1:34

Basic information

LNCipedia transcript ID: GPRC5D-AS1:34 
HGNC Gene Symbol: GPRC5D-AS1    
HGNC Full Gene Name: GPRC5D and HEBP1 antisense RNA 1
Ensembl Gene ID: ENSG00000247498
Ensembl Transcript ID: ENST00000536029
Location (hg38): chr12:12927764-12980094
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 466 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000536029.1; RP11-392P7.8-004; OTTHUMT00000401000.1; NONHSAT027020
Alternative gene names: ENSG00000247498.2; RP11-392P7.8; OTTHUMG00000168718.2; ENSG00000247498.5; RP11-392P7.6; ENSG00000247498.9; GPRC5D-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.7155 non-coding 
CPAT coding probability 15.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
GPRC5D-AS1:34 no no no no

Available literature

  1. Jin (2017), Association between genetic variants in the promoter region of a novel antisense long noncoding RNA RP11-392P7.6 and colorectal cancer risk., Environ. Mol. Mutagen.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPRC5A-2:5
4.0 lnc-GPRC5A-2:5
4.1 lnc-GPRC5A-2:5
5.0 lnc-GPRC5A-2:5
5.1 GPRC5D-AS1:16
5.2 GPRC5D-AS1:34