Transcript: lnc-HCK-1:1

Basic information

LNCipedia transcript ID: lnc-HCK-1:1 
LNCipedia gene ID: lnc-HCK-1
Ensembl Gene ID: ENSG00000275576
Ensembl Transcript ID: ENST00000611964
Location (hg38): chr20:32116171-32116629
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 459 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611964.1
Alternative gene names: ENSG00000275576.1; RP5-836N17.4; AL049539.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -232.1246 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HCK-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-HCK-1:1
4.1 lnc-HCK-1:1
5.0 lnc-HCK-1:1
5.1 lnc-BPIFB2-18:1
5.2 lnc-HCK-1:1