Transcript: lnc-HDDC2-2:3

Basic information

LNCipedia transcript ID: lnc-HDDC2-2:3 
LNCipedia gene ID: lnc-HDDC2-2
Location (hg38): chr6:125370211-125374324
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 821 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: TCONS_00011552; ENST00000422227.1; RP11-735G4.1-001; OTTHUMT00000042070.1; NONHSAT114794
Alternative gene names: XLOC_005827; linc-HDDC2-4; ENSG00000226409.1; RP11-735G4.1; OTTHUMG00000015507.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.7038 non-coding 
CPAT coding probability 29.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC2-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDDC2-2:3
3.1 lnc-HDDC2-2:3
4.0 lnc-HDDC2-2:3
4.1 lnc-HDDC2-2:3
5.0 lnc-HDDC2-2:3
5.1 lnc-HDDC2-2:3
5.2 lnc-HDDC2-2:3