Transcript: lnc-HDDC2-5:3

Basic information

LNCipedia transcript ID: lnc-HDDC2-5:3 
LNCipedia gene ID: lnc-HDDC2-5
Location (hg38): chr6:125578567-125745028
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 476 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000427852; ENST00000427852.1; RP11-624M8.1-002; OTTHUMT00000042075.1; NONHSAT114802
Alternative gene names: ENSG00000237742; RP11-624M8.1; ENSG00000237742.1; OTTHUMG00000015511.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -199.8505 non-coding 
CPAT coding probability 4.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC2-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HDDC2-4:3
3.1 lnc-HDDC2-5:3
4.0 lnc-HDDC2-5:3
4.1 lnc-HDDC2-5:3
5.0 lnc-HDDC2-5:3
5.1 lnc-HDDC2-5:3
5.2 lnc-HDDC2-5:3