Transcript: lnc-HDDC2-5:7

Basic information

LNCipedia transcript ID: lnc-HDDC2-5:7 
LNCipedia gene ID: lnc-HDDC2-5
Ensembl Gene ID: ENSG00000237742
Ensembl Transcript ID: ENST00000451660
Location (hg38): chr6:125578567-125749186
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 707 bp
Exons: 5
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451660.2; ENST00000451660.6
Alternative gene names: ENSG00000237742.2; RP11-624M8.1; ENSG00000237742.6; AL365259.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -125.9101 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HDDC2-5:7 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HDDC2-5:7
4.0 lnc-HDDC2-5:7
4.1 lnc-HDDC2-5:7
5.0 lnc-HDDC2-5:7
5.1 lnc-HDDC2-5:7
5.2 lnc-HDDC2-5:7