Transcript: lnc-HIVEP1-4:1

Basic information

LNCipedia transcript ID: lnc-HIVEP1-4:1 
LNCipedia gene ID: lnc-HIVEP1-4
Ensembl Gene ID: ENSG00000234427
Ensembl Transcript ID: ENST00000412132
Location (hg38): chr6:11810602-11811248
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011268; ENST00000412132; ENST00000412132.1; RP3-413H6.2-001; OTTHUMT00000039866.1; NONHSAT107764
Alternative gene names: XLOC_005171; linc-HIVEP1-4; ENSG00000234427; RP3-413H6.2; ENSG00000234427.1; OTTHUMG00000014261.1; AL022724.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -479.7903 non-coding 
CPAT coding probability 17.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HIVEP1-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HIVEP1-4:1
3.1 lnc-HIVEP1-4:1
4.0 lnc-HIVEP1-4:1
4.1 lnc-HIVEP1-4:1
5.0 lnc-HIVEP1-4:1
5.1 lnc-PRPF4B-129:6
5.2 lnc-HIVEP1-4:1