Transcript: lnc-HMBOX1-3:1

Basic information

LNCipedia transcript ID: lnc-HMBOX1-3:1 
LNCipedia gene ID: lnc-HMBOX1-3
Location (hg38): chr8:28860541-28952880
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 448 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000558283.1; AC108449.3-001; OTTHUMT00000417028.1; NONHSAT125769
Alternative gene names: ENSG00000259412.1; AC108449.3; OTTHUMG00000172137.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.466 non-coding 
CPAT coding probability 0.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HMBOX1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HMBOX1-3:1
4.0 lnc-HMBOX1-3:1
4.1 lnc-HMBOX1-3:1
5.0 lnc-HMBOX1-3:1
5.1 lnc-WRN-51:1
5.2 lnc-HMBOX1-3:1