Transcript: LINC01117:17

Basic information

LNCipedia transcript ID: LINC01117:17 
LNCipedia gene ID: LINC01117
Location (hg38): chr2:176817005-176820145
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1911 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT075679; FPKM1_group_17711_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -34.3387 non-coding 
CPAT coding probability 20.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01117:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HNRNPA3-11:1
4.0 lnc-HNRNPA3-11:1
4.1 LINC01117:17
5.0 LINC01117:17
5.1 LINC01117:17
5.2 LINC01117:17