Transcript: lnc-HPCAL1-1:18

Basic information

LNCipedia transcript ID: lnc-HPCAL1-1:18 
LNCipedia gene ID: lnc-HPCAL1-1
RefSeq ID: NR_110597
Location (hg38): chr2:10449728-10455552
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 882 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110597; NR_110597.1
Alternative gene names: LOC101929715


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -157.6921 non-coding 
CPAT coding probability 3.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPCAL1-1:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HPCAL1-1:18
4.0 lnc-HPCAL1-1:18
4.1 lnc-HPCAL1-1:18
5.0 lnc-HPCAL1-1:18
5.1 lnc-SNX17-194:15
5.2 lnc-HPCAL1-1:18