Transcript: lnc-HPCAL1-1:3

Basic information

LNCipedia transcript ID: lnc-HPCAL1-1:3 
LNCipedia gene ID: lnc-HPCAL1-1
Location (hg38): chr2:10449000-10454059
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 775 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004694; NONHSAT069107
Alternative gene names: XLOC_001342; linc-ATP6V1C2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.6921 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPCAL1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPCAL1-1:3
3.1 lnc-HPCAL1-1:3
4.0 lnc-HPCAL1-1:3
4.1 lnc-HPCAL1-1:3
5.0 lnc-HPCAL1-1:3
5.1 lnc-SNX17-194:7
5.2 lnc-HPCAL1-1:3