Transcript: lnc-HPCAL1-1:5

Basic information

LNCipedia transcript ID: lnc-HPCAL1-1:5 
LNCipedia gene ID: lnc-HPCAL1-1
Location (hg38): chr2:10449114-10457629
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3048 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003567; NONHSAT069108
Alternative gene names: XLOC_001342; linc-ATP6V1C2-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6356 non-coding 
CPAT coding probability 2.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPCAL1-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPCAL1-1:5
3.1 lnc-HPCAL1-1:5
4.0 lnc-HPCAL1-1:5
4.1 lnc-HPCAL1-1:5
5.0 lnc-HPCAL1-1:5
5.1 lnc-SNX17-194:9
5.2 lnc-HPCAL1-1:5