Transcript: lnc-HPCAL1-2:1

Basic information

LNCipedia transcript ID: lnc-HPCAL1-2:1 
LNCipedia gene ID: lnc-HPCAL1-2
Location (hg38): chr2:10562295-10566345
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2919 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000502075; TCONS_00002818; NONHSAT069121
Alternative gene names: ENSG00000246332; XLOC_001343; linc-ATP6V1C2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 12.8471 non-coding 
CPAT coding probability 12.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HPCAL1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HPCAL1-2:1
3.1 lnc-HPCAL1-2:1
4.0 lnc-HPCAL1-2:1
4.1 lnc-HPCAL1-2:1
5.0 lnc-HPCAL1-2:1
5.1 lnc-SNX17-193:2
5.2 lnc-HPCAL1-2:1