Transcript: lnc-HS1BP3-1:5

Basic information

LNCipedia transcript ID: lnc-HS1BP3-1:5 
LNCipedia gene ID: lnc-HS1BP3-1
Location (hg38): chr2:20526157-20540101
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 882 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005101; NONHSAT069449
Alternative gene names: XLOC_002010; linc-PUM2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.1169 non-coding 
CPAT coding probability 5.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HS1BP3-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-HS1BP3-1:4
3.1 lnc-HS1BP3-1:5
4.0 lnc-HS1BP3-1:5
4.1 lnc-HS1BP3-1:5
5.0 lnc-HS1BP3-1:5
5.1 lnc-RAD51AP2-52:4
5.2 lnc-HS1BP3-1:5