Transcript: lnc-HS3ST3A1-6:1

Basic information

LNCipedia transcript ID: lnc-HS3ST3A1-6:1 
LNCipedia gene ID: lnc-HS3ST3A1-6
Location (hg38): chr17:13800854-13802389
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1247 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT145735; FPKM1_group_12337_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.1425 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-HS3ST3A1-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HS3ST3A1-6:1
4.0 lnc-HS3ST3A1-6:1
4.1 lnc-HS3ST3A1-6:1
5.0 lnc-HS3ST3A1-6:1
5.1 lnc-COPS3-96:1
5.2 lnc-HS3ST3A1-6:1