Transcript: lnc-ICOS-1:1

Basic information

LNCipedia transcript ID: lnc-ICOS-1:1 
LNCipedia gene ID: lnc-ICOS-1
Ensembl Gene ID: ENSG00000234714
Ensembl Transcript ID: ENST00000411436
Location (hg38): chr2:204090457-204109849
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 570 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003081; ENST00000411436; ENST00000411436.1; AC009965.2-001; OTTHUMT00000335866.1; NONHSAT076502
Alternative gene names: XLOC_001814; linc-PARD3B-2; ENSG00000234714; AC009965.2; ENSG00000234714.1; OTTHUMG00000154540.1; AC009965.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -53.0297 non-coding 
CPAT coding probability 0.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ICOS-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ICOS-1:1
3.1 lnc-ICOS-1:1
4.0 lnc-ICOS-1:1
4.1 lnc-ICOS-1:1
5.0 lnc-ICOS-1:1
5.1 lnc-NOP58-29:1
5.2 lnc-ICOS-1:1