Transcript: LINC02574:3

Basic information

LNCipedia transcript ID: LINC02574:3 
HGNC Gene Symbol: LINC02574    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2574
Ensembl Gene ID: ENSG00000233975
Ensembl Transcript ID: ENST00000440492
Location (hg38): chr1:27660328-27662722
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 441 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000492; ENST00000440492; ENST00000440492.1; RP11-288L9.1-001; OTTHUMT00000009783.1; NONHSAT001910
Alternative gene names: XLOC_000755; linc-FGR; ENSG00000233975; RP11-288L9.1; ENSG00000233975.1; OTTHUMG00000003519.1; AL445490.2; LINC02574


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -157.2763 non-coding 
CPAT coding probability 10.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02574:3 no no no no

Available literature

  1. Kim (2017), Epidermal long non-coding RNAs are regulated by ultraviolet irradiation., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IFI6-1:1
3.1 lnc-IFI6-1:1
4.0 lnc-IFI6-1:1
4.1 lnc-IFI6-1:1
5.0 lnc-IFI6-1:1
5.1 LINC02574:2
5.2 LINC02574:3