Transcript: lnc-IGF1R-1:3

Basic information

LNCipedia transcript ID: lnc-IGF1R-1:3 
LNCipedia gene ID: lnc-IGF1R-1
Location (hg38): chr15:99027509-99031009
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1070 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00023546; NONHSAT050826
Alternative gene names: XLOC_011379; linc-SYNM-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.4988 non-coding 
CPAT coding probability 10.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGF1R-1:3 no no no no

Available literature

  1. Ma (2015), LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs., Nucleic Acids Res.
  2. Na (2015), Long non-coding RNA UCA1 contributes to the progression of prostate cancer and regulates proliferation through KLF4-KRT6/13 signaling pathway., Int J Clin Exp Med
  3. Pei (2015), Notch-1 promotes breast cancer cells proliferation by regulating LncRNA GAS5., Int J Clin Exp Med
  4. Wang (2015), LncRNA NALT interaction with NOTCH1 promoted cell proliferation in pediatric T cell acute lymphoblastic leukemia., Sci Rep
  5. Durinck (2014), The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia., Haematologica
  6. Trimarchi (2014), Genome-wide mapping and characterization of Notch-regulated long noncoding RNAs in acute leukemia., Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGF1R-2:1
3.1 lnc-IGF1R-2:1
4.0 lnc-IGF1R-1:3
4.1 lnc-IGF1R-1:3
5.0 lnc-IGF1R-1:3
5.1 lnc-ARRDC4-20:4
5.2 lnc-IGF1R-1:3