Transcript: lnc-IGFBP7-5:11

Basic information

LNCipedia transcript ID: lnc-IGFBP7-5:11 
LNCipedia gene ID: lnc-IGFBP7-5
Ensembl Gene ID: ENSG00000251339
Ensembl Transcript ID: ENST00000503232
Location (hg38): chr4:58860511-58977097
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 267 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007767; ENST00000503232; ENST00000503232.1; RP11-506N2.1-003; OTTHUMT00000365876.1; NONHSAT096579
Alternative gene names: XLOC_003962; linc-IGFBP7-7; ENSG00000251339; RP11-506N2.1; ENSG00000251339.1; OTTHUMG00000161226.3; ENSG00000251339.5; AC017091.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.6269 non-coding 
CPAT coding probability 0.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IGFBP7-5:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IGFBP7-4:11
3.1 lnc-IGFBP7-5:11
4.0 lnc-IGFBP7-5:11
4.1 lnc-IGFBP7-5:11
5.0 lnc-IGFBP7-5:11
5.1 lnc-CENPC-68:15
5.2 lnc-IGFBP7-5:11