Transcript: lnc-KCNA4-3:2

Basic information

LNCipedia transcript ID: lnc-KCNA4-3:2 
LNCipedia gene ID: lnc-KCNA4-3
Ensembl Gene ID: ENSG00000254530
Ensembl Transcript ID: ENST00000528553
Location (hg38): chr11:29335898-29350349
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 305 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000528553; ENST00000528553.1; RP11-460B17.3-001; OTTHUMT00000387989.1; NONHSAT018563
Alternative gene names: ENSG00000254530; RP11-460B17.3; ENSG00000254530.1; OTTHUMG00000166129.1; AC090124.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -289.5477 non-coding 
CPAT coding probability 1.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KCNA4-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNA4-2:2
3.1 lnc-KCNA4-3:2
4.0 lnc-KCNA4-3:2
4.1 lnc-KCNA4-3:2
5.0 lnc-KCNA4-3:2
5.1 lnc-CSTF3-43:2
5.2 lnc-KCNA4-3:2