Transcript: RFX3-AS1:17

Basic information

LNCipedia transcript ID: RFX3-AS1:17 
LNCipedia gene ID: RFX3-AS1
Location (hg38): chr9:3548681-3549736
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1056 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT130025; FPKM1_group_32588_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.0713 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFX3-AS1:17 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNV2-11:1
4.0 lnc-KCNV2-11:1
4.1 RFX3-AS1:17
5.0 RFX3-AS1:17
5.1 RFX3-AS1:17
5.2 RFX3-AS1:17