Transcript: lnc-RUBCN-2:2

Basic information

LNCipedia transcript ID: lnc-RUBCN-2:2 
LNCipedia gene ID: lnc-RUBCN-2
Location (hg38): chr3:197647763-197654404
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4887 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006773; NONHSAT094435
Alternative gene names: XLOC_003406; linc-BDH1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.2818 non-coding 
CPAT coding probability 16.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-RUBCN-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA0226-2:1
3.1 lnc-KIAA0226-2:1
4.0 lnc-KIAA0226-2:1
4.1 lnc-KIAA0226-2:1
5.0 lnc-KIAA0226-2:1
5.1 lnc-IQCG-22:2
5.2 lnc-RUBCN-2:2