Transcript: lnc-KIAA1217-1:3

Basic information

LNCipedia transcript ID: lnc-KIAA1217-1:3 
LNCipedia gene ID: lnc-KIAA1217-1
Location (hg38): chr10:23580063-23586237
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 511 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018139; NONHSAT011773
Alternative gene names: XLOC_008413; linc-KIAA1217


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -162.6077 non-coding 
CPAT coding probability 7.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIAA1217-1:3 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1217-1:3
3.1 lnc-KIAA1217-1:3
4.0 lnc-KIAA1217-1:3
4.1 lnc-KIAA1217-1:3
5.0 lnc-KIAA1217-1:3
5.1 lnc-NPY4R2-274:3
5.2 lnc-KIAA1217-1:3