Transcript: lnc-KIF16B-3:1

Basic information

LNCipedia transcript ID: lnc-KIF16B-3:1 
LNCipedia gene ID: lnc-KIF16B-3
Ensembl Gene ID: ENSG00000236985
Ensembl Transcript ID: ENST00000422574
Location (hg38): chr20:16857962-16864148
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 833 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028009; ENST00000422574; ENST00000422574.1; RP5-1195D24.1-001; OTTHUMT00000078115.1; NONHSAT078746
Alternative gene names: XLOC_013663; linc-KIF16B-2; ENSG00000236985; RP5-1195D24.1; ENSG00000236985.1; OTTHUMG00000031936.1; AL121892.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.0393 non-coding 
CPAT coding probability 1.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KIF16B-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIF16B-2:1
3.1 lnc-KIF16B-3:1
4.0 lnc-KIF16B-3:1
4.1 lnc-KIF16B-3:1
5.0 lnc-KIF16B-3:1
5.1 lnc-RRBP1-22:1
5.2 lnc-KIF16B-3:1