Transcript: LINC02358:3

Basic information

LNCipedia transcript ID: LINC02358:3 
HGNC Gene Symbol: LINC02358    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2358
Ensembl Gene ID: ENSG00000251256
Ensembl Transcript ID: ENST00000514413
Location (hg38): chr4:54845568-54859241
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 465 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007532; ENST00000514413; ENST00000514413.1; RP11-273B19.1-001; OTTHUMT00000361424.1; NONHSAT096428
Alternative gene names: XLOC_003541; linc-SRD5A3-3; ENSG00000251256; RP11-273B19.1; ENSG00000251256.1; OTTHUMG00000160614.1; LINC02358


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.3559 non-coding 
CPAT coding probability 5.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02358:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIT-1:1
3.1 lnc-KIT-1:1
4.0 lnc-KIT-1:1
4.1 lnc-KIT-1:1
5.0 lnc-KIT-1:1
5.1 LINC02358:2
5.2 LINC02358:3