Transcript: lnc-KRTDAP-1:4

Basic information

LNCipedia transcript ID: lnc-KRTDAP-1:4 
LNCipedia gene ID: lnc-KRTDAP-1
Ensembl Gene ID: ENSG00000233214
Ensembl Transcript ID: ENST00000413796
Location (hg38): chr19:35424062-35424652
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 450 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000413796.1; AC002511.2-001; OTTHUMT00000109454.2; NONHSAT146983
Alternative gene names: ENSG00000233214.1; AC002511.2; OTTHUMG00000048096.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.6858 non-coding 
CPAT coding probability 2.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KRTDAP-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KRTDAP-2:1
4.0 lnc-KRTDAP-1:4
4.1 lnc-KRTDAP-1:4
5.0 lnc-KRTDAP-1:4
5.1 lnc-SCGB2B2-41:6
5.2 lnc-KRTDAP-1:4