Transcript: lnc-LAMA2-2:1

Basic information

LNCipedia transcript ID: lnc-LAMA2-2:1 
LNCipedia gene ID: lnc-LAMA2-2
Location (hg38): chr6:128505125-128506276
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 339 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000411489.1; RP1-86D1.4-001; OTTHUMT00000042174.1; NONHSAT114868
Alternative gene names: ENSG00000227112.1; RP1-86D1.4; OTTHUMG00000015539.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -447.7976 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LAMA2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LAMA2-2:1
4.0 lnc-LAMA2-2:1
4.1 lnc-LAMA2-2:1
5.0 lnc-LAMA2-2:1
5.1 lnc-NCOA7-27:1
5.2 lnc-LAMA2-2:1