Transcript: lnc-LAT2-1:1

Basic information

LNCipedia transcript ID: lnc-LAT2-1:1 
LNCipedia gene ID: lnc-LAT2-1
Location (hg38): chr7:74254502-74255203
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 579 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00014161
Alternative gene names: XLOC_006144; linc-CLIP2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -155.1787 non-coding 
CPAT coding probability 38.03% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-LAT2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LAT2-1:1
3.1 lnc-LAT2-1:1
4.0 lnc-LAT2-1:1
4.1 lnc-LAT2-1:1
5.0 lnc-LAT2-1:1
5.1 lnc-FKBP6-31:1
5.2 lnc-LAT2-1:1