Transcript: lnc-LCORL-1:1

Basic information

LNCipedia transcript ID: lnc-LCORL-1:1 
LNCipedia gene ID: lnc-LCORL-1
Ensembl Gene ID: ENSG00000251048
Ensembl Transcript ID: ENST00000503815
Location (hg38): chr4:18488062-18489508
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 534 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007724; ENST00000503815; ENST00000503815.1; RP11-608B3.1-001; OTTHUMT00000359853.1; NONHSAT095721
Alternative gene names: XLOC_003900; linc-LCORL-2; ENSG00000251048; RP11-608B3.1; ENSG00000251048.1; OTTHUMG00000160241.1; AC093871.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.3395 non-coding 
CPAT coding probability 10.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LCORL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-LCORL-1:1
3.1 lnc-LCORL-1:1
4.0 lnc-LCORL-1:1
4.1 lnc-LCORL-1:1
5.0 lnc-LCORL-1:1
5.1 lnc-AFAP1-101:1
5.2 lnc-LCORL-1:1