Transcript: lnc-LEF1-3:18

Basic information

LNCipedia transcript ID: lnc-LEF1-3:18 
LNCipedia gene ID: lnc-LEF1-3
Ensembl Gene ID: ENSG00000249604
Ensembl Transcript ID: ENST00000512428
Location (hg38): chr4:107936031-107941255
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3147 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000512428.1; RP11-286E11.2-001; OTTHUMT00000363710.1; NONHSAT097732
Alternative gene names: ENSG00000249604.1; RP11-286E11.2; OTTHUMG00000161086.1; AC096564.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 11.1781 non-coding 
CPAT coding probability 3.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LEF1-3:18 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LEF1-2:1
4.0 lnc-LEF1-2:1
4.1 lnc-LEF1-3:18
5.0 lnc-LEF1-3:18
5.1 lnc-TIFA-33:16
5.2 lnc-LEF1-3:18