Transcript: MAPK6-DT:9

Basic information

LNCipedia transcript ID: MAPK6-DT:9 
HGNC Gene Symbol: MAPK6-DT    
HGNC Full Gene Name: MAPK6 divergent transcript
Ensembl Gene ID: ENSG00000259438
Ensembl Transcript ID: ENST00000561318
Location (hg38): chr15:52010999-52019095
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 865 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561318.1; CTD-2650P22.1-001; OTTHUMT00000419382.1; NONHSAT043901
Alternative gene names: ENSG00000259438.1; CTD-2650P22.1; OTTHUMG00000172595.1; AC090970.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.0158 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
MAPK6-DT:9 no no no no

Available literature

  1. Huang (2018), LncMAPK6 drives MAPK6 expression and liver TIC self-renewal., J. Exp. Clin. Cancer Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LEO1-3:1
4.0 lnc-LEO1-3:1
4.1 lnc-LEO1-3:1
5.0 lnc-LEO1-3:1
5.1 MAPK6-DT:4
5.2 MAPK6-DT:9