Transcript: lnc-LONP2-6:5

Basic information

LNCipedia transcript ID: lnc-LONP2-6:5 
LNCipedia gene ID: lnc-LONP2-6
Ensembl Gene ID: ENSG00000260086
Ensembl Transcript ID: ENST00000568150
Location (hg38): chr16:48623436-48744921
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 826 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568150.2
Alternative gene names: ENSG00000260086.2; RP11-42I10.1; AC007611.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -144.7555 non-coding 
CPAT coding probability 19.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LONP2-6:5 no no no no

Available literature

  1. Wang (2016), Transcriptome Analysis of Long Noncoding RNAs in Toll-Like Receptor 3-Activated Mesenchymal Stem Cells., Stem Cells Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-LONP2-6:5
4.1 lnc-LONP2-6:5
5.0 lnc-LONP2-6:5
5.1 lnc-ADGRG1-167:2
5.2 lnc-LONP2-6:5