Transcript: lnc-LYPD6-2:23

Basic information

LNCipedia transcript ID: lnc-LYPD6-2:23 
LNCipedia gene ID: lnc-LYPD6-2
Location (hg38): chr2:149646794-149648524
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1462 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT074910; FPKM1_group_17348_transcript_6
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -2.3895 non-coding 
CPAT coding probability 2.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-LYPD6-2:23 no no no no

Available literature

  1. Zhou (2015), Genomic analysis of drug resistant pancreatic cancer cell line by combining long non-coding RNA and mRNA expression profling., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LYPD6-9:1
4.0 lnc-LYPD6-9:1
4.1 lnc-LYPD6-2:23
5.0 lnc-LYPD6-2:23
5.1 lnc-KCNJ3-41:20
5.2 lnc-LYPD6-2:23