Transcript: lnc-MAK16-1:2

Basic information

LNCipedia transcript ID: lnc-MAK16-1:2 
LNCipedia gene ID: lnc-MAK16-1
Ensembl Gene ID: ENSG00000253642
Ensembl Transcript ID: ENST00000517292
Location (hg38): chr8:33755777-33796436
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 272 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517292; ENST00000517292.1; RP11-317N12.1-004; OTTHUMT00000376662.1
Alternative gene names: ENSG00000253642; RP11-317N12.1; ENSG00000253642.1; OTTHUMG00000163972.4; ENSG00000253642.5; AF279873.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.5003 non-coding 
CPAT coding probability 0.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAK16-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MAK16-1:2
3.1 lnc-MAK16-1:2
4.0 lnc-MAK16-1:2
4.1 lnc-MAK16-1:2
5.0 lnc-MAK16-1:2
5.1 lnc-WRN-66:2
5.2 lnc-MAK16-1:2