Transcript: lnc-MANEA-1:1

Basic information

LNCipedia transcript ID: lnc-MANEA-1:1 
LNCipedia gene ID: lnc-MANEA-1
Ensembl Gene ID: ENSG00000231143
Ensembl Transcript ID: ENST00000424506
Location (hg38): chr6:94163920-94194658
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 265 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011340; ENST00000424506; ENST00000424506.1; RP3-463P15.1-001; OTTHUMT00000041548.1; NONHSAT114035
Alternative gene names: XLOC_005394; linc-MANEA-1; ENSG00000231143; RP3-463P15.1; ENSG00000231143.1; OTTHUMG00000015230.1; AL157378.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.7979 non-coding 
CPAT coding probability 0.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MANEA-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MANEA-1:1
3.1 lnc-MANEA-1:1
4.0 lnc-MANEA-1:1
4.1 lnc-MANEA-1:1
5.0 lnc-MANEA-1:1
5.1 lnc-PM20D2-44:1
5.2 lnc-MANEA-1:1

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