Transcript: lnc-MAP3K8-2:1

Basic information

LNCipedia transcript ID: lnc-MAP3K8-2:1 
LNCipedia gene ID: lnc-MAP3K8-2
Location (hg38): chr10:30629548-30630063
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 351 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000423173.1; RP11-14C22.5-001; OTTHUMT00000047437.1; NONHSAT012587
Alternative gene names: ENSG00000236181.1; RP11-14C22.5; OTTHUMG00000017901.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.4771 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MAP3K8-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAP3K8-2:1
4.0 lnc-MAP3K8-2:1
4.1 lnc-MAP3K8-2:1
5.0 lnc-MAP3K8-2:1
5.1 lnc-NPY4R2-199:1
5.2 lnc-MAP3K8-2:1