Transcript: lnc-MDM4-2:1

Basic information

LNCipedia transcript ID: lnc-MDM4-2:1 
LNCipedia gene ID: lnc-MDM4-2
Ensembl Gene ID: ENSG00000240219
Ensembl Transcript ID: ENST00000444037
Location (hg38): chr1:204626775-204629712
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2219 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444037; ENST00000444037.1; RP11-430C7.5-001; OTTHUMT00000097796.1; NONHSAT008961
Alternative gene names: ENSG00000240219; RP11-430C7.5; ENSG00000240219.1; OTTHUMG00000040691.1; AL512306.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -1.8458 non-coding 
CPAT coding probability 37.59% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-MDM4-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MDM4-1:1
3.1 lnc-MDM4-2:1
4.0 lnc-MDM4-2:1
4.1 lnc-MDM4-2:1
5.0 lnc-MDM4-2:1
5.1 lnc-CNTN2-12:1
5.2 lnc-MDM4-2:1