Transcript: lnc-MED10-11:5

Basic information

LNCipedia transcript ID: lnc-MED10-11:5 
LNCipedia gene ID: lnc-MED10-11
Ensembl Gene ID: ENSG00000248973
Ensembl Transcript ID: ENST00000507435
Location (hg38): chr5:4451930-4866221
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 721 bp
Exons: 6
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000507435; ENST00000507435.1; RP11-445O3.2-001; OTTHUMT00000365582.1; NONHSAT100135
Alternative gene names: ENSG00000248973; RP11-445O3.2; ENSG00000248973.1; OTTHUMG00000161642.1; AC106799.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.7409 non-coding 
CPAT coding probability 3.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MED10-11:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MED10-9:1
3.1 lnc-MED10-12:1
4.0 lnc-MED10-11:5
4.1 lnc-MED10-11:5
5.0 lnc-MED10-11:5
5.1 lnc-IRX2-41:3
5.2 lnc-MED10-11:5