Transcript: lnc-MEIS2-1:2

Basic information

LNCipedia transcript ID: lnc-MEIS2-1:2 
LNCipedia gene ID: lnc-MEIS2-1
Ensembl Gene ID: ENSG00000259280
Ensembl Transcript ID: ENST00000558089
Location (hg38): chr15:36876379-36886533
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 566 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558089.1; RP11-122D10.1-002; OTTHUMT00000417548.2; NONHSAT041672
Alternative gene names: ENSG00000259280.1; RP11-122D10.1; OTTHUMG00000172258.3; AC018563.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -820.9775 non-coding 
CPAT coding probability 9.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MEIS2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MEIS2-1:2
4.0 lnc-MEIS2-1:2
4.1 lnc-MEIS2-1:2
5.0 lnc-MEIS2-1:2
5.1 lnc-NANOGP8-16:7
5.2 lnc-MEIS2-1:2