Transcript: lnc-MICAL3-2:4

Basic information

LNCipedia transcript ID: lnc-MICAL3-2:4 
LNCipedia gene ID: lnc-MICAL3-2
Ensembl Gene ID: ENSG00000225335
Ensembl Transcript ID: ENST00000426483
Location (hg38): chr22:18076527-18077797
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 805 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426483.1; XXbac-B476C20.9-001; OTTHUMT00000314642.1; NONHSAT083254
Alternative gene names: ENSG00000225335.1; XXbac-B476C20.9; OTTHUMG00000149968.1; ENSG00000225335.2; ENSG00000225335.3; AC016027.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.5737 non-coding 
CPAT coding probability 3.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MICAL3-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-XXbac-B461K10.4.1-2:1
4.0 lnc-MICAL3-2:4
4.1 lnc-MICAL3-2:4
5.0 lnc-MICAL3-2:4
5.1 lnc-RTN4R-53:6
5.2 lnc-MICAL3-2:4