Transcript: LINC01638:21

Basic information

LNCipedia transcript ID: LINC01638:21 
HGNC Gene Symbol: LINC01638    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1638
Ensembl Gene ID: ENSG00000233521
Ensembl Transcript ID: ENST00000418271
Location (hg38): chr22:27223297-27224657
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418271; ENST00000418271.1; RP5-1172A22.1-001; OTTHUMT00000320635.1; NONHSAT084580
Alternative gene names: ENSG00000233521; RP5-1172A22.1; ENSG00000233521.1; OTTHUMG00000150955.1; ENSG00000233521.5; LINC01638


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.9682 non-coding 
CPAT coding probability 10.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01638:21 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MN1-6:2
3.1 lnc-MN1-6:2
4.0 lnc-MN1-6:2
4.1 lnc-MN1-6:2
5.0 lnc-MN1-6:2
5.1 LINC01638:11
5.2 LINC01638:21