Transcript: lnc-MSH4-1:4

Basic information

LNCipedia transcript ID: lnc-MSH4-1:4 
LNCipedia gene ID: lnc-MSH4-1
RefSeq ID: NR_125939
Location (hg38): chr1:76011324-76019356
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 369 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000436121; ENST00000436121.1; RP11-550H2.1-001; OTTHUMT00000026985.1; NONHSAT004008; FPKM1_group_864_transcript_1; NR_125939; NR_125939.1
Alternative gene names: ENSG00000225605; RP11-550H2.1; ENSG00000225605.1; OTTHUMG00000009790.1; LOC101927342


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -173.501 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-MSH4-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST6GALNAC3-2:1
3.1 lnc-ST6GALNAC3-2:1
4.0 lnc-MSH4-1:4
4.1 lnc-MSH4-1:4
5.0 lnc-MSH4-1:4
5.1 lnc-ST6GALNAC3-5:4
5.2 lnc-MSH4-1:4