Transcript: lnc-NDUFA5-1:2

Basic information

LNCipedia transcript ID: lnc-NDUFA5-1:2 
LNCipedia gene ID: lnc-NDUFA5-1
Ensembl Gene ID: ENSG00000230442
Ensembl Transcript ID: ENST00000429396
Location (hg38): chr7:123619982-123624729
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 648 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429396.1; RP11-390E23.3-003; OTTHUMT00000347502.1; NONHSAT123054
Alternative gene names: ENSG00000230442.1; RP11-390E23.3; OTTHUMG00000157115.1; ENSG00000230442.5; AC006333.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -113.0887 non-coding 
CPAT coding probability 2.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NDUFA5-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NDUFA5-1:2
4.0 lnc-NDUFA5-1:2
4.1 lnc-NDUFA5-1:2
5.0 lnc-NDUFA5-1:2
5.1 lnc-RNF133-7:3
5.2 lnc-NDUFA5-1:2