Transcript: LINC02085:7

Basic information

LNCipedia transcript ID: LINC02085:7 
HGNC Gene Symbol: LINC02085    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2085
Ensembl Gene ID: ENSG00000214407
Ensembl Transcript ID: ENST00000465215
RefSeq ID: NR_026934
Location (hg38): chr3:101940859-101997926
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2051 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005382; ENST00000465215; ENST00000465215.1; RP11-221J22.1-001; OTTHUMT00000353854.1; NONHSAT090919; NR_026934; NR_026934.1
Alternative gene names: XLOC_002741; linc-ZPLD1; ENSG00000214407; RP11-221J22.1; ENSG00000214407.3; OTTHUMG00000159212.1; LINC02085; LOC152225


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.1447 non-coding 
CPAT coding probability 6.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02085:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NFKBIZ-1:1
3.1 lnc-NFKBIZ-1:1
4.0 lnc-NFKBIZ-1:1
4.1 lnc-NFKBIZ-1:1
5.0 lnc-NFKBIZ-1:1
5.1 LINC02085:2
5.2 LINC02085:7