Transcript: lnc-NOS2-5:1

Basic information

LNCipedia transcript ID: lnc-NOS2-5:1 
LNCipedia gene ID: lnc-NOS2-5
Ensembl Gene ID: ENSG00000264734
Ensembl Transcript ID: ENST00000580280
Location (hg38): chr17:26998080-26999941
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 357 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580280.1; RP11-260A9.6-002; OTTHUMT00000445052.1; NONHSAT052285
Alternative gene names: ENSG00000264734.1; RP11-260A9.6; OTTHUMG00000179164.1; AC069061.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.905 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NOS2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NOS2-5:1
4.0 lnc-NOS2-5:1
4.1 lnc-NOS2-5:1
5.0 lnc-NOS2-5:1
5.1 lnc-SLC6A4-135:3
5.2 lnc-NOS2-5:1