Transcript: lnc-NPEPL1-1:1

Basic information

LNCipedia transcript ID: lnc-NPEPL1-1:1 
LNCipedia gene ID: lnc-NPEPL1-1
Ensembl Gene ID: ENSG00000270279
Ensembl Transcript ID: ENST00000603095
Location (hg38): chr20:58754351-58756838
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1619 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT080568; ENST00000603095.1
Alternative gene names: ENSG00000270279.1; RP4-806M20.5; AL132655.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.6059 non-coding 
CPAT coding probability 11.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NPEPL1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NPEPL1-1:1
4.0 lnc-NPEPL1-1:1
4.1 lnc-NPEPL1-1:1
5.0 lnc-NPEPL1-1:1
5.1 lnc-STX16-6:1
5.2 lnc-NPEPL1-1:1