Transcript: LINC02102:15

Basic information

LNCipedia transcript ID: LINC02102:15 
HGNC Gene Symbol: LINC02102    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2102
Ensembl Gene ID: ENSG00000248677
Ensembl Transcript ID: ENST00000503989
RefSeq ID: NR_103771
Location (hg38): chr5:6686325-6707711
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3364 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009596; ENST00000503989; ENST00000503989.1; CTD-2044J15.1-001; OTTHUMT00000365837.1; NONHSAT100211; NR_103771; NR_103771.1
Alternative gene names: XLOC_004725; linc-NSUN2-3; ENSG00000248677; CTD-2044J15.1; ENSG00000248677.1; OTTHUMG00000161705.1; LINC02102; LOC100505625


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.2586 non-coding 
CPAT coding probability 2.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02102:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NSUN2-1:2
3.1 lnc-NSUN2-1:2
4.0 lnc-NSUN2-1:2
4.1 lnc-NSUN2-1:2
5.0 lnc-NSUN2-1:2
5.1 LINC02102:7
5.2 LINC02102:15