Transcript: LINC01938:16

Basic information

LNCipedia transcript ID: LINC01938:16 
HGNC Gene Symbol: LINC01938    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1938
Ensembl Gene ID: ENSG00000254066
Ensembl Transcript ID: ENST00000521341
Location (hg38): chr5:165220577-165241752
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1864 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521341; ENST00000521341.1; CTB-181F24.1-001; OTTHUMT00000376029.1; NONHSAT104946
Alternative gene names: ENSG00000254066; CTB-181F24.1; ENSG00000254066.1; OTTHUMG00000163861.1; LINC01938


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.381 non-coding 
CPAT coding probability 0.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01938:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NUDCD2-4:4
3.1 lnc-NUDCD2-6:4
4.0 lnc-NUDCD2-6:4
4.1 lnc-NUDCD2-6:4
5.0 lnc-NUDCD2-6:4
5.1 LINC01938:8
5.2 LINC01938:16