Transcript: lnc-NXPH1-1:1

Basic information

LNCipedia transcript ID: lnc-NXPH1-1:1 
LNCipedia gene ID: lnc-NXPH1-1
Ensembl Gene ID: ENSG00000234710
Ensembl Transcript ID: ENST00000447999
Location (hg38): chr7:9737322-9769513
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 618 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000447999; ENST00000447999.1; AC060834.3-001; OTTHUMT00000324434.1; NONHSAT119172
Alternative gene names: ENSG00000234710; AC060834.3; ENSG00000234710.1; OTTHUMG00000151925.1; AC060834.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -306.1202 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-NXPH1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NXPH1-2:1
3.1 lnc-NXPH1-1:1
4.0 lnc-NXPH1-1:1
4.1 lnc-NXPH1-1:1
5.0 lnc-NXPH1-1:1
5.1 lnc-SLC29A4-54:3
5.2 lnc-NXPH1-1:1