Transcript: TDRKH-AS1:25

Basic information

LNCipedia transcript ID: TDRKH-AS1:25 
LNCipedia gene ID: TDRKH-AS1
Ensembl Gene ID: ENSG00000269489
Ensembl Transcript ID: ENST00000601909
Location (hg38): chr1:151798054-151798602
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT006435; ENST00000601909.1
Alternative gene names: ENSG00000269489.1; RP11-98D18.17; AL589765.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -84.8925 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TDRKH-AS1:25 no no no no

Available literature

  1. Li (2016), Integrated bioinformatics analysis of chromatin regulator EZH2 in regulating mRNA and lncRNA expression by ChIP sequencing and RNA sequencing., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-OAZ3-10:1
4.0 lnc-OAZ3-10:1
4.1 lnc-OAZ3-1:12
5.0 lnc-OAZ3-1:12
5.1 TDRKH-AS1:13
5.2 TDRKH-AS1:25