Transcript: LINC02539:13

Basic information

LNCipedia transcript ID: LINC02539:13 
HGNC Gene Symbol: LINC02539    
HGNC Full Gene Name: long intergenic non-protein coding RNA 2539
Ensembl Gene ID: ENSG00000234956
Ensembl Transcript ID: ENST00000419220
Location (hg38): chr6:137730170-137738983
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 703 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011570; ENST00000419220; ENST00000419220.1; RP11-356I2.1-002; OTTHUMT00000042410.1; NONHSAT115172
Alternative gene names: XLOC_005848; linc-OLIG3-2; ENSG00000234956; RP11-356I2.1; ENSG00000234956.1; OTTHUMG00000015661.1; ENSG00000234956.5; LINC02539; ENSG00000234956.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -196.3669 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC02539:13 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-OLIG3-2:1
3.1 lnc-OLIG3-2:1
4.0 lnc-OLIG3-2:1
4.1 lnc-OLIG3-2:1
5.0 lnc-OLIG3-2:1
5.1 LINC02539:7
5.2 LINC02539:13